PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G432900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 274aa    MW: 29782.1 Da    PI: 6.9817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G432900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-1270117455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h   Er RR+++++ f+ L  llP++      K +K++i+ + v+YIksL+
  Prupe.1G432900.1.p  70 MHTWTERERRKKMRDMFSSLHALLPQL----PAKADKSTIVDESVRYIKSLE 117
                         57788*********************6....39*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.31666116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1468126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-1371121No hitNo description
Gene3DG3DSA:4.10.280.102.9E-1571131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-971117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-974122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00202196230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSCLQQNSVL GSPNSNLGTC GGGELLKLEK MGMNVNSYLN SSSALMEKGV IKESTGKAAS  60
GGGNESEHGM HTWTERERRK KMRDMFSSLH ALLPQLPAKA DKSTIVDESV RYIKSLEKTL  120
QTKQKQKLDK LQSTSALIAS NTELAGETRE AFLADLLHPS KNLMVTNAFP ASLSPACFET  180
WFSPTVVVNI CGPDAQFSVC SPRKPGLLTT ILYILEKHEL DVVSAHVSSD QYRCMYMIHA  240
HAGGACDHFP EALSVEDTFK LAAGEINLWL LSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226777.11e-171hypothetical protein PRUPE_ppa018148mg
RefseqXP_008220349.11e-164PREDICTED: uncharacterized protein LOC103320445
TrEMBLM5XR141e-171M5XR14_PRUPE; Uncharacterized protein
STRINGPOPTR_0014s02600.14e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-40bHLH family protein